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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.13

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-01-30, 10:47 EST based on data in: /home/e1garcia/shotgun_PIRE/pire_lcwgs_data_processing/sphaeramia_orbicularis/fq_fp1_clmp_fp2

        General Statistics

        Showing 221/221 rows and 4/6 columns.
        Sample Name% DuplicationGC content% PF% Adapter
        Sor-ABur_001-Ex1-6G-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        36.1%
        99.4%
        1.5%
        Sor-ABur_002-Ex1-7G-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        34.7%
        99.4%
        1.5%
        Sor-ABur_003-Ex1-8G-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        34.4%
        99.5%
        1.6%
        Sor-ABur_004-Ex1-9G-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.3%
        99.4%
        1.5%
        Sor-ABur_005-Ex1-10G-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.5%
        99.4%
        1.6%
        Sor-ABur_006-Ex1-11G-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.4%
        99.4%
        1.5%
        Sor-ABur_007-Ex1-12G-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        34.9%
        99.5%
        1.5%
        Sor-ABur_008-Ex1-1H-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.0%
        99.4%
        1.5%
        Sor-ABur_009-Ex1-2H-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.7%
        99.4%
        1.5%
        Sor-ABur_010-Ex1-3H-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.3%
        99.4%
        1.5%
        Sor-ABur_011-Ex1-4H-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        34.9%
        99.5%
        1.6%
        Sor-ABur_012-Ex1-5H-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        34.3%
        99.4%
        1.4%
        Sor-ABur_013-Ex1-6H-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        34.9%
        99.3%
        1.3%
        Sor-ABur_014-Ex1-7H-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        35.1%
        99.4%
        1.4%
        Sor-ABur_015-Ex1-8H-lcwgs-1-T.clmp.r1r2_fastp
        0.8%
        35.1%
        99.5%
        1.7%
        Sor-ABur_016-Ex1-9H-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        34.3%
        99.4%
        1.5%
        Sor-ACan_001-Ex1-1A-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        34.5%
        99.1%
        1.1%
        Sor-ACan_002-Ex1-2A-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        34.8%
        99.4%
        1.5%
        Sor-ACan_003-Ex1-3A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        34.7%
        99.3%
        1.4%
        Sor-ACan_004-Ex1-4A-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.1%
        99.4%
        1.5%
        Sor-ACan_005-Ex1-5A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        34.5%
        99.4%
        1.5%
        Sor-ACan_006-Ex1-6A-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        33.9%
        99.4%
        1.4%
        Sor-ACan_007-Ex1-7A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        34.7%
        99.4%
        1.4%
        Sor-ACan_008-Ex1-8A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        34.6%
        99.4%
        1.4%
        Sor-ACan_009-Ex1-9A-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        35.1%
        99.4%
        1.4%
        Sor-ACan_010-Ex1-10A-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.0%
        99.3%
        1.5%
        Sor-ACan_011-Ex1-11A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.0%
        99.4%
        1.5%
        Sor-ACan_012-Ex1-12A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        34.2%
        99.4%
        1.5%
        Sor-ACan_013-Ex1-1B-lcwgs-1-T.clmp.r1r2_fastp
        0.1%
        36.9%
        98.5%
        1.8%
        Sor-ACan_014-Ex1-2B-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        35.4%
        99.5%
        1.6%
        Sor-ACan_015-Ex1-3B-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        34.7%
        99.5%
        1.6%
        Sor-ACan_016-Ex1-4B-lcwgs-1-T.clmp.r1r2_fastp
        0.8%
        35.4%
        99.5%
        1.7%
        Sor-ACan_017-Ex1-5B-lcwgs-1-T.clmp.r1r2_fastp
        0.8%
        35.7%
        99.5%
        1.6%
        Sor-ACan_018-Ex1-6B-lcwgs-1-T.clmp.r1r2_fastp
        2.5%
        36.4%
        99.1%
        0.9%
        Sor-ACan_019-Ex1-7B-lcwgs-1-T.clmp.r1r2_fastp
        0.3%
        38.5%
        98.7%
        1.7%
        Sor-ACan_020-Ex1-8B-lcwgs-1-T.clmp.r1r2_fastp
        0.8%
        36.2%
        99.5%
        1.6%
        Sor-ACan_021-Ex1-9B-lcwgs-1-T.clmp.r1r2_fastp
        5.3%
        59.2%
        97.8%
        0.3%
        Sor-ACan_022-Ex1-10B-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.4%
        99.3%
        1.5%
        Sor-ACan_023-Ex1-11B-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        35.7%
        99.3%
        1.4%
        Sor-ACan_024-Ex1-12B-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        35.1%
        99.3%
        1.3%
        Sor-ACan_025-Ex1-1C-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.6%
        99.3%
        1.4%
        Sor-ACan_026-Ex1-2C-lcwgs-1-T.clmp.r1r2_fastp
        5.6%
        57.4%
        98.0%
        0.4%
        Sor-ACan_027-Ex1-3C-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        35.3%
        99.4%
        1.5%
        Sor-ACan_028-Ex1-4C-lcwgs-1-T.clmp.r1r2_fastp
        0.8%
        35.3%
        99.5%
        1.6%
        Sor-ACan_029-Ex1-5C-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.9%
        99.4%
        1.4%
        Sor-ACan_030-Ex1-6C-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        35.1%
        99.3%
        1.2%
        Sor-ACan_031-Ex1-7C-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        34.8%
        99.2%
        1.0%
        Sor-ACan_032-Ex1-8C-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        47.7%
        98.4%
        1.1%
        Sor-ACan_033-Ex1-9C-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        35.5%
        99.4%
        1.3%
        Sor-ACan_034-Ex1-10C-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.8%
        99.4%
        1.5%
        Sor-ACan_035-Ex1-11C-lcwgs-1-T.clmp.r1r2_fastp
        2.6%
        43.1%
        98.3%
        1.3%
        Sor-ACan_036-Ex1-12C-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        35.4%
        99.4%
        1.4%
        Sor-ACan_037-Ex1-1D-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        34.6%
        99.3%
        1.4%
        Sor-ACan_038-Ex1-2D-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        35.8%
        99.4%
        1.5%
        Sor-ACan_039-Ex1-3D-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.9%
        99.4%
        1.6%
        Sor-ACan_040-Ex1-4D-lcwgs-1-T.clmp.r1r2_fastp
        1.0%
        35.6%
        99.4%
        1.5%
        Sor-ACan_041-Ex1-5D-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        35.6%
        99.3%
        1.4%
        Sor-ACan_042-Ex1-6D-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        36.0%
        99.2%
        1.2%
        Sor-ACan_043-Ex1-7D-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        34.1%
        99.4%
        1.4%
        Sor-ACan_044-Ex1-8D-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        36.1%
        99.3%
        1.5%
        Sor-ACan_045-Ex1-9D-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        35.9%
        99.3%
        1.3%
        Sor-ACan_046-Ex1-10D-lcwgs-1-T.clmp.r1r2_fastp
        3.7%
        56.6%
        97.7%
        0.5%
        Sor-ACan_047-Ex1-11D-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        35.8%
        99.5%
        1.6%
        Sor-ACan_048-Ex1-12D-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        34.8%
        99.4%
        1.4%
        Sor-ACan_049-Ex1-1E-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        35.8%
        99.2%
        1.4%
        Sor-ACan_050-Ex1-2E-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        35.6%
        99.3%
        1.4%
        Sor-ACan_051-Ex1-3E-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        36.4%
        99.3%
        1.5%
        Sor-ACan_052-Ex1-4E-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        35.9%
        99.4%
        1.6%
        Sor-ACan_053-Ex1-5E-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        37.4%
        99.4%
        1.5%
        Sor-ACan_054-Ex1-6E-lcwgs-1-T.clmp.r1r2_fastp
        4.5%
        55.5%
        97.9%
        0.4%
        Sor-ACan_055-Ex1-7E-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        35.0%
        99.2%
        1.2%
        Sor-ACeb_001-Ex1-8E-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        35.9%
        99.3%
        1.5%
        Sor-ACeb_002-Ex1-9E-lcwgs-1-T.clmp.r1r2_fastp
        2.1%
        44.4%
        99.0%
        1.2%
        Sor-ACeb_003-Ex1-10E-lcwgs-1-T.clmp.r1r2_fastp
        0.6%
        36.4%
        99.6%
        1.8%
        Sor-ACeb_004-Ex1-11E-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        40.1%
        99.4%
        1.6%
        Sor-ACeb_005-Ex1-12E-lcwgs-1-T.clmp.r1r2_fastp
        3.2%
        55.5%
        98.2%
        0.7%
        Sor-ACeb_006-Ex1-1F-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        43.0%
        98.7%
        2.0%
        Sor-ACeb_007-Ex1-2F-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        42.7%
        99.3%
        1.6%
        Sor-ACeb_008-Ex1-3F-lcwgs-1-T.clmp.r1r2_fastp
        0.7%
        35.7%
        99.5%
        1.8%
        Sor-ACeb_009-Ex1-4F-lcwgs-1-T.clmp.r1r2_fastp
        0.6%
        36.4%
        99.6%
        1.8%
        Sor-ACeb_010-Ex1-5F-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        40.5%
        99.2%
        1.9%
        Sor-ACeb_011-Ex1-6F-lcwgs-1-T.clmp.r1r2_fastp
        3.6%
        54.4%
        98.0%
        0.6%
        Sor-ACeb_012-Ex1-7F-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        38.1%
        99.4%
        1.6%
        Sor-ACeb_013-Ex1-8F-lcwgs-1-T.clmp.r1r2_fastp
        2.4%
        51.8%
        98.1%
        1.2%
        Sor-ACeb_014-Ex1-9F-lcwgs-1-T.clmp.r1r2_fastp
        2.3%
        47.6%
        98.5%
        1.4%
        Sor-ACeb_015-Ex1-10F-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        41.3%
        99.2%
        1.5%
        Sor-ACeb_016-Ex1-11F-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        44.4%
        99.2%
        1.4%
        Sor-ACeb_017-Ex1-12F-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        41.9%
        99.3%
        1.5%
        Sor-ACeb_018-Ex1-1G-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        40.8%
        98.8%
        1.8%
        Sor-ACeb_019-Ex1-3G-lcwgs-1-T.clmp.r1r2_fastp
        0.1%
        36.3%
        98.8%
        1.8%
        Sor-ACeb_020-Ex1-2G-lcwgs-1-T.clmp.r1r2_fastp
        0.1%
        36.9%
        98.9%
        1.7%
        Sor-ACeb_021-Ex1-4G-lcwgs-1-T.clmp.r1r2_fastp
        0.1%
        36.2%
        98.8%
        2.0%
        Sor-ACeb_022-Ex1-5G-lcwgs-1-T.clmp.r1r2_fastp
        3.2%
        51.8%
        98.4%
        0.8%
        Sor-CBur_001-Ex1-2C-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.9%
        99.0%
        0.9%
        Sor-CBur_003-Ex1-1G-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        39.3%
        98.9%
        0.8%
        Sor-CBur_004-Ex1-1H-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        39.2%
        99.0%
        1.0%
        Sor-CBur_005-Ex1-8H-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.2%
        98.8%
        0.8%
        Sor-CBur_009-Ex1-3H-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.9%
        99.1%
        1.1%
        Sor-CBur_010-Ex1-2H-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.6%
        98.9%
        0.8%
        Sor-CBur_011-Ex1-5F-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        39.1%
        98.8%
        0.8%
        Sor-CBur_012-Ex1-3E-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.9%
        99.0%
        0.8%
        Sor-CBur_013-Ex1-6B-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.5%
        99.0%
        1.0%
        Sor-CBur_014-Ex1-6H-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.2%
        99.3%
        1.3%
        Sor-CBur_015-Ex1-2D-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.7%
        98.9%
        0.8%
        Sor-CBur_016-Ex1-6G-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.6%
        99.1%
        1.0%
        Sor-CBur_020-Ex1-7D-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        39.5%
        99.1%
        1.2%
        Sor-CBur_021-Ex1-5C-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        39.5%
        98.6%
        0.7%
        Sor-CBur_022-Ex1-1A-lcwgs-1-T.clmp.r1r2_fastp
        2.1%
        39.9%
        98.7%
        0.8%
        Sor-CBur_023-Ex1-5E-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        39.0%
        98.9%
        0.7%
        Sor-CBur_025-Ex1-8B-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.5%
        99.1%
        1.1%
        Sor-CBur_028-Ex1-2E-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.6%
        98.9%
        0.7%
        Sor-CBur_033-Ex1-3A-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.8%
        98.9%
        0.9%
        Sor-CBur_034-Ex1-3C-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        39.0%
        98.9%
        0.9%
        Sor-CBur_036-Ex1-3F-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        39.2%
        98.8%
        0.8%
        Sor-CBur_037-Ex1-5A-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        39.2%
        99.1%
        1.1%
        Sor-CBur_040-Ex1-4B-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        39.1%
        98.8%
        0.8%
        Sor-CBur_041-Ex1-7F-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        39.5%
        98.9%
        0.9%
        Sor-CBur_042-Ex1-6C-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.7%
        99.1%
        1.0%
        Sor-CBur_043-Ex1-1B-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        40.2%
        98.8%
        0.8%
        Sor-CBur_044-Ex1-6A-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.5%
        99.2%
        1.1%
        Sor-CBur_046-Ex1-2A-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        38.9%
        98.7%
        0.7%
        Sor-CBur_049-Ex1-7B-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        40.0%
        99.0%
        1.1%
        Sor-CBur_050-Ex1-6D-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.4%
        99.1%
        1.0%
        Sor-CBur_051-Ex1-8D-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.7%
        99.2%
        1.2%
        Sor-CBur_052-Ex1-5B-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        39.9%
        98.5%
        0.7%
        Sor-CBur_053-Ex1-8F-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.6%
        99.2%
        1.2%
        Sor-CBur_054-Ex1-7A-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        41.8%
        99.4%
        1.6%
        Sor-CBur_055-Ex1-2G-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.6%
        98.8%
        0.8%
        Sor-CBur_058-Ex1-8C-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.6%
        99.2%
        1.2%
        Sor-CBur_059-Ex1-3G-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        39.9%
        99.1%
        1.2%
        Sor-CBur_062-Ex1-6E-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.4%
        99.1%
        1.0%
        Sor-CBur_064-Ex1-4D-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        39.1%
        98.9%
        0.9%
        Sor-CBur_065-Ex1-1F-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        39.4%
        99.0%
        0.9%
        Sor-CBur_066-Ex1-3B-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        39.3%
        98.7%
        0.7%
        Sor-CBur_067-Ex1-4H-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.9%
        99.2%
        1.1%
        Sor-CBur_068-Ex1-6F-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.4%
        99.1%
        1.0%
        Sor-CBur_069-Ex1-5D-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        39.2%
        99.0%
        1.0%
        Sor-CBur_070-Ex1-1E-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        39.8%
        99.0%
        0.8%
        Sor-CBur_071-Ex1-4G-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.6%
        99.0%
        0.9%
        Sor-CBur_073-Ex1-7H-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        39.1%
        99.1%
        1.1%
        Sor-CBur_075-Ex1-5H-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        39.0%
        99.1%
        1.0%
        Sor-CBur_076-Ex1-2B-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        39.0%
        98.6%
        0.7%
        Sor-CBur_077-Ex1-8E-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.3%
        99.2%
        1.1%
        Sor-CBur_078-Ex1-5G-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.8%
        98.8%
        0.8%
        Sor-CBur_079-Ex1-8G-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.3%
        99.1%
        1.0%
        Sor-CBur_080-Ex1-2F-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        39.1%
        98.7%
        0.7%
        Sor-CBur_081-Ex1-8A-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.9%
        99.2%
        1.2%
        Sor-CBur_082-Ex1-4C-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        38.9%
        98.8%
        0.8%
        Sor-CBur_084-Ex1-4A-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        39.2%
        99.0%
        1.0%
        Sor-CBur_085-Ex1-7E-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        39.5%
        99.1%
        1.0%
        Sor-CBur_086-Ex1-1D-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        39.8%
        99.0%
        0.9%
        Sor-CBur_087-Ex1-1C-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        39.8%
        98.9%
        0.9%
        Sor-CBur_088-Ex1-4F-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        39.5%
        99.1%
        1.1%
        Sor-CBur_089-Ex1-4E-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.9%
        99.1%
        0.9%
        Sor-CBur_091-Ex1-7C-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        39.8%
        99.0%
        1.0%
        Sor-CBur_093-Ex1-7G-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        39.4%
        99.0%
        1.0%
        Sor-CBur_096-Ex1-3D-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        39.4%
        98.8%
        0.8%
        Sor-CPnd_001-Ex1-3E-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.2%
        99.2%
        1.1%
        Sor-CPnd_002-Ex1-5E-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.6%
        99.2%
        1.1%
        Sor-CPnd_003-Ex1-2B-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        39.1%
        98.9%
        0.9%
        Sor-CPnd_004-Ex1-1G-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.3%
        99.1%
        1.1%
        Sor-CPnd_005-Ex1-3D-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        38.5%
        98.9%
        0.8%
        Sor-CPnd_006-Ex1-2D-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.6%
        99.1%
        1.1%
        Sor-CPnd_007-Ex1-1C-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        40.1%
        98.7%
        0.8%
        Sor-CPnd_008-Ex1-1A-lcwgs-1-T.clmp.r1r2_fastp
        3.0%
        39.3%
        97.6%
        0.2%
        Sor-CPnd_009-Ex1-6A-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        39.7%
        98.9%
        0.8%
        Sor-CPnd_010-Ex1-1H-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.7%
        98.9%
        0.8%
        Sor-CPnd_011-Ex1-8D-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.7%
        99.1%
        1.1%
        Sor-CPnd_012-Ex1-5B-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        38.9%
        98.8%
        0.8%
        Sor-CPnd_013-Ex1-7F-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.6%
        99.1%
        1.1%
        Sor-CPnd_014-Ex1-1F-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.8%
        99.1%
        1.1%
        Sor-CPnd_015-Ex1-5F-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.9%
        99.0%
        1.0%
        Sor-CPnd_016-Ex1-1B-lcwgs-1-T.clmp.r1r2_fastp
        2.2%
        39.4%
        98.2%
        0.4%
        Sor-CPnd_017-Ex1-3G-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        37.9%
        99.1%
        1.0%
        Sor-CPnd_018-Ex1-1E-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.5%
        99.1%
        1.0%
        Sor-CPnd_019-Ex1-6G-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.7%
        99.1%
        1.0%
        Sor-CPnd_020-Ex1-2E-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.2%
        99.2%
        1.0%
        Sor-CPnd_021-Ex1-4D-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.4%
        99.1%
        1.1%
        Sor-CPnd_022-Ex1-7C-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.6%
        98.9%
        0.9%
        Sor-CPnd_023-Ex1-4A-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.9%
        98.9%
        0.9%
        Sor-CPnd_024-Ex1-5G-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.2%
        99.0%
        1.0%
        Sor-CPnd_025-Ex1-4B-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        39.1%
        98.9%
        0.9%
        Sor-CPnd_026-Ex1-3H-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.5%
        98.9%
        0.9%
        Sor-CPnd_027-Ex1-3C-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        38.8%
        98.7%
        0.7%
        Sor-CPnd_028-Ex1-3A-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        39.0%
        98.7%
        0.7%
        Sor-CPnd_029-Ex1-8E-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.0%
        99.1%
        1.0%
        Sor-CPnd_030-Ex1-2H-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.5%
        99.1%
        1.0%
        Sor-CPnd_031-Ex1-5D-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.7%
        99.0%
        0.9%
        Sor-CPnd_032-Ex1-4F-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.3%
        99.2%
        1.2%
        Sor-CPnd_033-Ex1-2F-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        37.9%
        99.1%
        0.9%
        Sor-CPnd_034-Ex1-4G-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.5%
        99.1%
        1.0%
        Sor-CPnd_035-Ex1-4C-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.6%
        98.9%
        0.9%
        Sor-CPnd_036-Ex1-5C-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.3%
        99.0%
        1.0%
        Sor-CPnd_037-Ex1-6C-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        38.7%
        98.8%
        0.8%
        Sor-CPnd_038-Ex1-2A-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        38.8%
        98.6%
        0.7%
        Sor-CPnd_039-Ex1-5H-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.5%
        99.1%
        1.0%
        Sor-CPnd_040-Ex1-6F-lcwgs-1-T.clmp.r1r2_fastp
        0.9%
        38.0%
        99.0%
        1.3%
        Sor-CPnd_041-Ex1-7A-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        40.0%
        99.2%
        1.2%
        Sor-CPnd_042-Ex1-4E-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.2%
        99.2%
        1.1%
        Sor-CPnd_043-Ex1-1D-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.6%
        98.9%
        0.8%
        Sor-CPnd_044-Ex1-8G-lcwgs-1-T.clmp.r1r2_fastp
        1.3%
        38.1%
        99.1%
        1.1%
        Sor-CPnd_045-Ex1-7B-lcwgs-1-T.clmp.r1r2_fastp
        1.7%
        38.8%
        98.7%
        0.8%
        Sor-CPnd_046-Ex1-5A-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.8%
        99.0%
        1.0%
        Sor-CPnd_047-Ex1-4H-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        38.2%
        99.1%
        1.1%
        Sor-CPnd_048-Ex1-8A-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        39.4%
        98.9%
        1.0%
        Sor-CPnd_049-Ex1-3B-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        38.4%
        98.8%
        0.8%
        Sor-CPnd_050-Ex1-3F-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.5%
        99.0%
        1.0%
        Sor-CPnd_051-Ex1-6H-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.3%
        98.9%
        1.0%
        Sor-CPnd_052-Ex1-6D-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        37.9%
        99.2%
        1.2%
        Sor-CPnd_053-Ex1-2C-lcwgs-1-T.clmp.r1r2_fastp
        1.8%
        38.8%
        98.8%
        0.8%
        Sor-CPnd_054-Ex1-8F-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.8%
        99.0%
        1.0%
        Sor-CPnd_055-Ex1-7G-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        37.7%
        99.1%
        1.1%
        Sor-CPnd_056-Ex1-7E-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        37.8%
        99.1%
        1.1%
        Sor-CPnd_057-Ex1-6E-lcwgs-1-T.clmp.r1r2_fastp
        1.1%
        38.1%
        99.2%
        1.2%
        Sor-CPnd_058-Ex1-2G-lcwgs-1-T.clmp.r1r2_fastp
        1.5%
        37.5%
        99.1%
        1.0%
        Sor-CPnd_060-Ex1-7H-lcwgs-1-T.clmp.r1r2_fastp
        1.4%
        38.5%
        98.9%
        0.9%
        Sor-CPnd_063-Ex1-7D-lcwgs-1-T.clmp.r1r2_fastp
        1.2%
        38.2%
        99.1%
        1.1%
        Sor-CPnd_066-Ex1-8B-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.8%
        98.8%
        0.9%
        Sor-CPnd_068-Ex1-8H-lcwgs-1-T.clmp.r1r2_fastp
        1.6%
        38.3%
        98.9%
        0.9%
        Sor-CPnd_069-Ex1-6B-lcwgs-1-T.clmp.r1r2_fastp
        2.0%
        39.2%
        98.7%
        0.8%
        Sor-CPnd_072-Ex1-8C-lcwgs-1-T.clmp.r1r2_fastp
        1.9%
        38.9%
        98.6%
        0.7%

        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

        loading..

        Duplication Rates

        Duplication rates of sampled reads.

        loading..

        Insert Sizes

        Insert size estimation of sampled reads.

        loading..

        Sequence Quality

        Average sequencing quality over each base of all reads.

        loading..

        GC Content

        Average GC content over each base of all reads.

        loading..

        N content

        Average N content over each base of all reads.

        loading..

        MultiQC v1.13 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.